PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15030_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 200aa    MW: 22299.7 Da    PI: 7.2663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15030_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1964113355
                                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y+GVr+++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  cra_locus_15030_iso_2_len_800_ver_3  64 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSMRG 113
                                          9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.19E-3162122No hitNo description
PROSITE profilePS5103223.06463121IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2363123IPR016177DNA-binding domain
SMARTSM003801.6E-3763127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3063121IPR001471AP2/ERF domain
PfamPF008473.3E-1464113IPR001471AP2/ERF domain
PRINTSPR003671.1E-106475IPR001471AP2/ERF domain
PRINTSPR003671.1E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
XFNFNDSEDM FLLDVLSEVV RESSDTNSSS SAAAAAASAS SINKEEEVTS NIKFKGGAKK  60
EQNYRGVRRR PWGKYAAEIR DSTRNGIRVW LGTFDSAEEA ALAYDQAAFS MRGSMAVLNF  120
PIEIVKESLR EMKFKCGSED GCSPVVELKK RHSSMKKKSG KNRKNRGREL LSENVVVFED  180
LGAEYLEELL NSSEINMGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3060124266ATERF1
3gcc_A4e-3060124266ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264523.12e-69PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC82e-63ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD8VD372e-76D8VD37_ACTDE; Ethylene response factor 10
STRINGVIT_07s0005g03230.t017e-69(Vitis vinifera)